Tsibris A, Sagar M, Gulick R, Su Z, Hughes M, Greaves W, Subramanian M, Flexner C, Leopold K, Coakley E, Kuritzkes D. The in vivo emergence of vicriviroc resistance in an HIV-1 subtype C infected subject. Journal of Virology. 82 (16): 8210-8214, 2008.
Sagar M, Laeyendecker O, Lee S, Gamiel J, Wawer MJ, Gray RH, Serwadda D, Sewankambo NK, Shepherd JC, Toma J, Huang W, Quinn TC. HIVs with signature genotypic characteristics are selected during heterosexual transmission. Journal of Infectious Diseases. 199: 580-9, 2009.
Paredes R, Sagar M, Marconi VC, Hoh R, Martin JN, Parkin NT, Petropoulos CJ, Deeks SG, Kuritzkes DR. Mechanisms of slow decay of multidrug resistant HIV-1 carrying the M184V mutation in viremic subjects interrupting reverse transcriptase inhibitors. Journal of Virology. 83 (4): 2038-43, 2009
Sagar M, Lavreys L, Baeten JM, Richardson BA, Mandaliya K, Chohan BH, Kreiss JK, Overbaugh J. Infection with multiple HIV-1 variants is associated with faster disease progression. J Virol 2003;77(23):12921-6.
Sagar M, Lavreys L, Baeten JM, Richardson BA, Mandaliya K, Achola N, Kreiss JK, Overbaugh J. Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population. AIDS 2004;18:615-619.
Sagar M, Kirkegaard E, Long EM, Celum C, Buchbinder S, Daar ES, Overbaugh J. HIV-1 diversity at the time of infection is not restricted to certain populations or specific HIV-1 subtypes. J Virol 2004;78(13):7279-7283.
Chohan B*, Lang D*, Sagar M*, Korber B, Lavreys L, Richardson B, Overbaugh J. Selection for HIV-1 envelope glycosylation variants during transmission J Virol 2005; 79 (10) 6528-6531
*authors contributed equally to this work
Sagar M, Kirkegaard E, Lavreys L, Overbaugh J. Diversity in HIV-1 envelope V1-V3 sequences early in infection reflects sequence diversity throughout the HIV-1 genome but does not predict the extent of sequence diversity during chronic infection. AIDS Research and Human Retroviruses. 22.5:430-437, 2006.
Sagar M, Wu X, Lee S, Overbaugh J. HIV-1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection and these modification affect antibody neutralization sensitivity. Journal of Virology. 80 (19):9586-98, 2006.